TPDB

3D PDB MODEL

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TPDB ID TPDB29945

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 129-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

DQVDVKDCANHEIKEVLVPGCHGSEPCIIGRGKPFQLEALFEANQNSATAKIEIKASIDGLSVDVPGIDPNACHYMNCPLVNGQQYDIKYTWNVPKIAPNSENVVVTVKVLGDNGVLACAIATHAKIQD

FASTA

>TPDB29945|Toxicity|length=129
DQVDVKDCANHEIKEVLVPGCHGSEPCIIGRGKPFQLEALFEANQNSATAKIEIKASIDGLSVDVPGIDPNACHYMNCPLVNGQQYDIKYTWNVPKIAPNSENVVVTVKVLGDNGVLACAIATHAKIQD

Formula C607H966N166O190S7

Absent Amino Acids

Common Amino Acids V

Mass 13853.77

PI 4.85

Basic Residues 14

Acidic Residues 16

Hydrophobic Residues 51

Net Charge -6

Boman Index 34.36

Hydrophobicity -0.104

Aliphatic Index 95.19

Half Life

Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour

Extinction Coefficient Cystines 10345

Absorbance 280nm 74.67

Polar Residues 34

number

12

A

1

R

10

N

9

D

6

C

7

E

6

Q

9

G

4

H

11

I

7

L

9

K

1

M

2

F

8

P

5

S

4

T

1

W

3

Y

14

V

Amino Acid Distribution

A: 12 R: 1 N: 10 D: 9 C: 6 E: 7 Q: 6 G: 9 H: 4 I: 11 L: 7 K: 9 M: 1 F: 2 P: 8 S: 5 T: 4 W: 1 Y: 3 V: 14

Length

129

Formula

C607H966N166O190S7

Mass

13853.77

PI

4.85

Net Charge

-6

Boman Index

34.36

Hydrophobicity

-0.104

Evidence 1 Activity

Source & Reference

Database Source NA