TPDB

3D PDB MODEL

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TPDB ID TPDB29854

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 61-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

DGYIRGSNGCKVSCLWGNEGCNKECKAFGAYYGYCWTWGLACWCQGLPDDKTWKSESNTCG

FASTA

>TPDB29854|Toxicity|length=61
DGYIRGSNGCKVSCLWGNEGCNKECKAFGAYYGYCWTWGLACWCQGLPDDKTWKSESNTCG

Formula C295H423N79O90S8

Absent Amino Acids HM

Common Amino Acids G

Mass 6772.56

PI 6.15

Basic Residues 6

Acidic Residues 6

Hydrophobic Residues 18

Net Charge -0

Boman Index 0.77

Hydrophobicity -0.570

Aliphatic Index 35.25

Half Life

Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour

Extinction Coefficient Cystines 33960

Absorbance 280nm 501.44

Polar Residues 24

number

3

A

1

R

4

N

3

D

8

C

3

E

1

Q

10

G

0

H

1

I

3

L

5

K

0

M

1

F

1

P

4

S

3

T

5

W

4

Y

1

V

Amino Acid Distribution

A: 3 R: 1 N: 4 D: 3 C: 8 E: 3 Q: 1 G: 10 H: 0 I: 1 L: 3 K: 5 M: 0 F: 1 P: 1 S: 4 T: 3 W: 5 Y: 4 V: 1

Length

61

Formula

C295H423N79O90S8

Mass

6772.56

PI

6.15

Net Charge

-0

Boman Index

0.77

Hydrophobicity

-0.570

Evidence 1 Activity

Source & Reference

Database Source NA