TPDB

3D PDB MODEL

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TPDB ID TPDB29839

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 61-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

DGYIRGGDGCKVSCVINHVFCDNECKAAGGSYGYCWAWGLACWCEGLPAEREWDYETDTCG

FASTA

>TPDB29839|Toxicity|length=61
DGYIRGGDGCKVSCVINHVFCDNECKAAGGSYGYCWAWGLACWCEGLPAEREWDYETDTCG

Formula C289H411N77O92S8

Absent Amino Acids QM

Common Amino Acids G

Mass 6692.38

PI 4.06

Basic Residues 5

Acidic Residues 10

Hydrophobic Residues 21

Net Charge -6

Boman Index 6.15

Hydrophobicity -0.302

Aliphatic Index 48.03

Half Life

Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour

Extinction Coefficient Cystines 28460

Absorbance 280nm 425.26

Polar Residues 18

number

5

A

2

R

2

N

5

D

8

C

5

E

0

Q

10

G

1

H

2

I

2

L

2

K

0

M

1

F

1

P

2

S

2

T

4

W

4

Y

3

V

Amino Acid Distribution

A: 5 R: 2 N: 2 D: 5 C: 8 E: 5 Q: 0 G: 10 H: 1 I: 2 L: 2 K: 2 M: 0 F: 1 P: 1 S: 2 T: 2 W: 4 Y: 4 V: 3

Length

61

Formula

C289H411N77O92S8

Mass

6692.38

PI

4.06

Net Charge

-6

Boman Index

6.15

Hydrophobicity

-0.302

Evidence 1 Activity

Source & Reference

Database Source NA