TPDB

3D PDB MODEL

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TPDB ID TPDB29766

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 46-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

DEIRAYSDLSDEEYSYEGKRQFSPCVDVCVHHTGDVKECKKACNEK

FASTA

>TPDB29766|Toxicity|length=46
DEIRAYSDLSDEEYSYEGKRQFSPCVDVCVHHTGDVKECKKACNEK

Formula C224H345N63O79S4

Absent Amino Acids MW

Common Amino Acids E

Mass 5312.82

PI 4.73

Basic Residues 9

Acidic Residues 11

Hydrophobic Residues 12

Net Charge -4

Boman Index 23.05

Hydrophobicity -1.067

Aliphatic Index 46.52

Half Life

Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour

Extinction Coefficient Cystines 4720

Absorbance 280nm 88.84

Polar Residues 14

number

2

A

2

R

1

N

5

D

4

C

6

E

1

Q

2

G

2

H

1

I

1

L

5

K

0

M

1

F

1

P

4

S

1

T

0

W

3

Y

4

V

Amino Acid Distribution

A: 2 R: 2 N: 1 D: 5 C: 4 E: 6 Q: 1 G: 2 H: 2 I: 1 L: 1 K: 5 M: 0 F: 1 P: 1 S: 4 T: 1 W: 0 Y: 3 V: 4

Length

46

Formula

C224H345N63O79S4

Mass

5312.82

PI

4.73

Net Charge

-4

Boman Index

23.05

Hydrophobicity

-1.067

Evidence 1 Activity

Source & Reference

Database Source NA