TPDB

3D PDB MODEL

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TPDB ID TPDB29455

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 56-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

CYMNPSGTMVCKEHETMCYRLIVWTFQYHVLYLKGCSSSCPGGNNCACCSTDLCNN

FASTA

>TPDB29455|Toxicity|length=56
CYMNPSGTMVCKEHETMCYRLIVWTFQYHVLYLKGCSSSCPGGNNCACCSTDLCNN

Formula C264H402N72O82S12

Absent Amino Acids

Common Amino Acids C

Mass 6281.25

PI 6.82

Basic Residues 5

Acidic Residues 3

Hydrophobic Residues 18

Net Charge -0

Boman Index 2.71

Hydrophobicity -0.050

Aliphatic Index 52.14

Half Life

Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 11960

Absorbance 280nm 190.41

Polar Residues 28

number

1

A

1

R

5

N

1

D

9

C

2

E

1

Q

4

G

2

H

1

I

4

L

2

K

3

M

1

F

2

P

5

S

4

T

1

W

4

Y

3

V

Amino Acid Distribution

A: 1 R: 1 N: 5 D: 1 C: 9 E: 2 Q: 1 G: 4 H: 2 I: 1 L: 4 K: 2 M: 3 F: 1 P: 2 S: 5 T: 4 W: 1 Y: 4 V: 3

Length

56

Formula

C264H402N72O82S12

Mass

6281.25

PI

6.82

Net Charge

-0

Boman Index

2.71

Hydrophobicity

-0.050

Evidence 1 Activity

Source & Reference

Database Source NA