TPDB

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.

TPDB ID TPDB29310

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 37-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

CTDEGGDCDPGNHNCCRGSCLVLQHKAICGIVYTMVS

FASTA

>TPDB29310|Toxicity|length=37
CTDEGGDCDPGNHNCCRGSCLVLQHKAICGIVYTMVS

Formula C157H252N48O54S7

Absent Amino Acids FW

Common Amino Acids C

Mass 3900.44

PI 5.16

Basic Residues 4

Acidic Residues 4

Hydrophobic Residues 10

Net Charge -2

Boman Index 7.58

Hydrophobicity 0.019

Aliphatic Index 68.38

Half Life

Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 1865

Absorbance 280nm 47.82

Polar Residues 14

number

1

A

1

R

2

N

3

D

6

C

1

E

1

Q

5

G

2

H

2

I

2

L

1

K

1

M

0

F

1

P

2

S

2

T

0

W

1

Y

3

V

Amino Acid Distribution

A: 1 R: 1 N: 2 D: 3 C: 6 E: 1 Q: 1 G: 5 H: 2 I: 2 L: 2 K: 1 M: 1 F: 0 P: 1 S: 2 T: 2 W: 0 Y: 1 V: 3

Length

37

Formula

C157H252N48O54S7

Mass

3900.44

PI

5.16

Net Charge

-2

Boman Index

7.58

Hydrophobicity

0.019

Evidence 1 Activity

Source & Reference

Database Source NA