TPDB

3D PDB MODEL

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TPDB ID TPDB29115

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

modified_plain

Has_Modification Yes

Description A 28-aa modified toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Modification

Modified, details unspecified

Sequence

CKSKGAKCSKLMYDCCSGSCSGTVGRCX

FASTA

>TPDB29115|Toxicity|length=28
CKSKGAKCSKLMYDCCSGSCSGTVGRCX

Formula C107H184N34O37S7

Absent Amino Acids NEQHIFPW

Common Amino Acids C

Mass 2763.26

PI 8.58

Basic Residues 5

Acidic Residues 1

Hydrophobic Residues 5

Net Charge +4

Boman Index 3.56

Hydrophobicity -0.161

Aliphatic Index 27.86

Half Life

Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 1865

Absorbance 280nm 67.49

Polar Residues 13

number

1

A

1

R

0

N

1

D

6

C

0

E

0

Q

4

G

0

H

0

I

1

L

4

K

1

M

0

F

0

P

5

S

1

T

0

W

1

Y

1

V

Amino Acid Distribution

A: 1 R: 1 N: 0 D: 1 C: 6 E: 0 Q: 0 G: 4 H: 0 I: 0 L: 1 K: 4 M: 1 F: 0 P: 0 S: 5 T: 1 W: 0 Y: 1 V: 1

Length

28

Formula

C107H184N34O37S7

Mass

2763.26

PI

8.58

Net Charge

+4

Boman Index

3.56

Hydrophobicity

-0.161

Evidence 1 Activity

Source & Reference

Database Source NA