TPDB

3D PDB MODEL

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TPDB ID TPDB28929

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 39-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

CIGEGVPCDENDPRCCFGLVCLKPTLHGIWYKSYYCYKK

FASTA

>TPDB28929|Toxicity|length=39
CIGEGVPCDENDPRCCFGLVCLKPTLHGIWYKSYYCYKK

Formula C202H302N50O55S6

Absent Amino Acids AQM

Common Amino Acids C

Mass 4503.28

PI 7.63

Basic Residues 6

Acidic Residues 4

Hydrophobic Residues 13

Net Charge +1

Boman Index 3.97

Hydrophobicity -0.210

Aliphatic Index 64.87

Half Life

Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 11835

Absorbance 280nm 262.81

Polar Residues 13

number

0

A

1

R

1

N

2

D

6

C

2

E

0

Q

4

G

1

H

2

I

3

L

4

K

0

M

1

F

3

P

1

S

1

T

1

W

4

Y

2

V

Amino Acid Distribution

A: 0 R: 1 N: 1 D: 2 C: 6 E: 2 Q: 0 G: 4 H: 1 I: 2 L: 3 K: 4 M: 0 F: 1 P: 3 S: 1 T: 1 W: 1 Y: 4 V: 2

Length

39

Formula

C202H302N50O55S6

Mass

4503.28

PI

7.63

Net Charge

+1

Boman Index

3.97

Hydrophobicity

-0.210

Evidence 1 Activity

Source & Reference

Database Source NA