TPDB

3D PDB MODEL

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TPDB ID TPDB28287

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 45-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

ALGNCVPVPGQCIGNGCFCDREAPHGNCCDTDGCTSLFWCPGSKA

FASTA

>TPDB28287|Toxicity|length=45
ALGNCVPVPGQCIGNGCFCDREAPHGNCCDTDGCTSLFWCPGSKA

Formula C190H288N56O62S8

Absent Amino Acids MY

Common Amino Acids C

Mass 4605.19

PI 4.44

Basic Residues 3

Acidic Residues 4

Hydrophobic Residues 11

Net Charge -2

Boman Index 4.89

Hydrophobicity -0.027

Aliphatic Index 45.56

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 6000

Absorbance 280nm 130.29

Polar Residues 16

number

3

A

1

R

3

N

3

D

8

C

1

E

1

Q

7

G

1

H

1

I

2

L

1

K

0

M

2

F

4

P

2

S

2

T

1

W

0

Y

2

V

Amino Acid Distribution

A: 3 R: 1 N: 3 D: 3 C: 8 E: 1 Q: 1 G: 7 H: 1 I: 1 L: 2 K: 1 M: 0 F: 2 P: 4 S: 2 T: 2 W: 1 Y: 0 V: 2

Length

45

Formula

C190H288N56O62S8

Mass

4605.19

PI

4.44

Net Charge

-2

Boman Index

4.89

Hydrophobicity

-0.027

Evidence 1 Activity

Source & Reference

Database Source NA