TPDB

3D PDB MODEL

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TPDB ID TPDB28116

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 58-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

ADVPGNYPLDSSDDTYLCAPLGENPSCIQICRKHGVKYGYCYAFQCWCEYLEDKNVKI

FASTA

>TPDB28116|Toxicity|length=58
ADVPGNYPLDSSDDTYLCAPLGENPSCIQICRKHGVKYGYCYAFQCWCEYLEDKNVKI

Formula C292H433N73O90S6

Absent Amino Acids M

Common Amino Acids CY

Mass 6598.45

PI 4.50

Basic Residues 6

Acidic Residues 8

Hydrophobic Residues 21

Net Charge -3

Boman Index 9.20

Hydrophobicity -0.416

Aliphatic Index 67.24

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 14815

Absorbance 280nm 224.52

Polar Residues 21

number

3

A

1

R

3

N

5

D

6

C

3

E

2

Q

4

G

1

H

3

I

4

L

4

K

0

M

1

F

4

P

3

S

1

T

1

W

6

Y

3

V

Amino Acid Distribution

A: 3 R: 1 N: 3 D: 5 C: 6 E: 3 Q: 2 G: 4 H: 1 I: 3 L: 4 K: 4 M: 0 F: 1 P: 4 S: 3 T: 1 W: 1 Y: 6 V: 3

Length

58

Formula

C292H433N73O90S6

Mass

6598.45

PI

4.50

Net Charge

-3

Boman Index

9.20

Hydrophobicity

-0.416

Evidence 1 Activity

Source & Reference

Database Source NA