TPDB

3D PDB MODEL

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TPDB ID TPDB28107

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 58-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

ADVPGNYPLDKDGNTYKCFLLGGNEECLNVCKLHGVQYGYCYASKCWCEYLEDDKDSV

FASTA

>TPDB28107|Toxicity|length=58
ADVPGNYPLDKDGNTYKCFLLGGNEECLNVCKLHGVQYGYCYASKCWCEYLEDDKDSV

Formula C287H423N71O93S6

Absent Amino Acids RIM

Common Amino Acids DCGLY

Mass 6548.30

PI 4.20

Basic Residues 6

Acidic Residues 10

Hydrophobic Residues 20

Net Charge -5

Boman Index 11.51

Hydrophobicity -0.531

Aliphatic Index 63.79

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 14815

Absorbance 280nm 226.24

Polar Residues 20

number

2

A

0

R

4

N

6

D

6

C

4

E

1

Q

6

G

1

H

0

I

6

L

5

K

0

M

1

F

2

P

2

S

1

T

1

W

6

Y

4

V

Amino Acid Distribution

A: 2 R: 0 N: 4 D: 6 C: 6 E: 4 Q: 1 G: 6 H: 1 I: 0 L: 6 K: 5 M: 0 F: 1 P: 2 S: 2 T: 1 W: 1 Y: 6 V: 4

Length

58

Formula

C287H423N71O93S6

Mass

6548.30

PI

4.20

Net Charge

-5

Boman Index

11.51

Hydrophobicity

-0.531

Evidence 1 Activity

Source & Reference

Database Source NA