TPDB

3D PDB MODEL

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TPDB ID TPDB27580

Activity

Antibacterial Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia AI4AVP AVPpred-BWR dbAMP 3.0 DRAVP 2.0

Sequence_Type

standard

Has_Modification No

Description A 36-aa standard natural multi-activity (Antibacterial and Antiviral) peptide sequence curated from Peptipedia, AI4AVP, AVPpred-BWR, and other sources, with an available 3D structural model.

Sequence

YTSLIRELISNARTQQTDNEESLRNVDKWASLWNWF

FASTA

>TPDB27580|Antibacterial;Antiviral|length=36
YTSLIRELISNARTQQTDNEESLRNVDKWASLWNWF

Formula C195H295N55O61

Absent Amino Acids CGHMP

Common Amino Acids NLS

Mass 4385.82

PI 4.72

Basic Residues 4

Acidic Residues 5

Hydrophobic Residues 14

Net Charge -1

Boman Index 4.97

Hydrophobicity -0.844

Aliphatic Index 78.61

Half Life

Mammalian: 2.8 hour Yeast: 10 min E.coli: 2 min

Extinction Coefficient Cystines 17990

Absorbance 280nm 410.19

Polar Residues 14

number

2

A

3

R

4

N

2

D

0

C

3

E

2

Q

0

G

0

H

2

I

4

L

1

K

0

M

1

F

0

P

4

S

3

T

3

W

1

Y

1

V

Amino Acid Distribution

A: 2 R: 3 N: 4 D: 2 C: 0 E: 3 Q: 2 G: 0 H: 0 I: 2 L: 4 K: 1 M: 0 F: 1 P: 0 S: 4 T: 3 W: 3 Y: 1 V: 1

Length

36

Formula

C195H295N55O61

Mass

4385.82

PI

4.72

Net Charge

-1

Boman Index

4.97

Hydrophobicity

-0.844

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAVP 2.0