TPDB

3D PDB MODEL

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TPDB ID TPDB27508

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 43-aa standard natural antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

YRHGEVYHFCDSRTSVCLRRKRNCLVRMRGVCPGRSFCCIRMK

FASTA

>TPDB27508|Antibacterial|length=43
YRHGEVYHFCDSRTSVCLRRKRNCLVRMRGVCPGRSFCCIRMK

Formula C217H357N77O55S8

Absent Amino Acids AQW

Common Amino Acids R

Mass 5181.18

PI 10.36

Basic Residues 13

Acidic Residues 2

Hydrophobic Residues 13

Net Charge +9

Boman Index 8.68

Hydrophobicity -0.474

Aliphatic Index 54.19

Half Life

Mammalian: 2.8 hour Yeast: 10 min E.coli: 2 min

Extinction Coefficient Cystines 3355

Absorbance 280nm 64.75

Polar Residues 13

number

0

A

9

R

1

N

1

D

6

C

1

E

0

Q

3

G

2

H

1

I

2

L

2

K

2

M

2

F

1

P

3

S

1

T

0

W

2

Y

4

V

Amino Acid Distribution

A: 0 R: 9 N: 1 D: 1 C: 6 E: 1 Q: 0 G: 3 H: 2 I: 1 L: 2 K: 2 M: 2 F: 2 P: 1 S: 3 T: 1 W: 0 Y: 2 V: 4

Length

43

Formula

C217H357N77O55S8

Mass

5181.18

PI

10.36

Net Charge

+9

Boman Index

8.68

Hydrophobicity

-0.474

Evidence 1 Activity

Source & Reference

Database Source NA