TPDB

3D PDB MODEL

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TPDB ID TPDB27247

Activity

Antibacterial Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia AI4AVP dbAMP 3.0 DRAVP 2.0

Sequence_Type

standard

Has_Modification No

Description A 35-aa standard natural multi-activity (Antibacterial and Antiviral) peptide sequence curated from Peptipedia, AI4AVP, dbAMP 3.0, and other sources, with an available 3D structural model.

Sequence

WYNQTKDLQQKFYEIIMDIEQNNVQGKKGIQQLQK

FASTA

>TPDB27247|Antibacterial;Antiviral|length=35
WYNQTKDLQQKFYEIIMDIEQNNVQGKKGIQQLQK

Formula C192H302N52O58S1

Absent Amino Acids ARCHPS

Common Amino Acids Q

Mass 4298.88

PI 9.37

Basic Residues 5

Acidic Residues 4

Hydrophobic Residues 12

Net Charge +1

Boman Index 10.13

Hydrophobicity -1.214

Aliphatic Index 75.14

Half Life

Mammalian: 2.8 hour Yeast: 3 min E.coli: 2 min

Extinction Coefficient Cystines 8480

Absorbance 280nm 197.26

Polar Residues 14

number

0

A

0

R

3

N

2

D

0

C

2

E

8

Q

2

G

0

H

4

I

2

L

5

K

1

M

1

F

0

P

0

S

1

T

1

W

2

Y

1

V

Amino Acid Distribution

A: 0 R: 0 N: 3 D: 2 C: 0 E: 2 Q: 8 G: 2 H: 0 I: 4 L: 2 K: 5 M: 1 F: 1 P: 0 S: 0 T: 1 W: 1 Y: 2 V: 1

Length

35

Formula

C192H302N52O58S1

Mass

4298.88

PI

9.37

Net Charge

+1

Boman Index

10.13

Hydrophobicity

-1.214

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAVP 2.0