TPDB

3D PDB MODEL

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TPDB ID TPDB26181

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 29-aa standard natural antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

VLSPADKTNVKAAWGKVGAHAGEYGAEAL

FASTA

>TPDB26181|Antibacterial|length=29
VLSPADKTNVKAAWGKVGAHAGEYGAEAL

Formula C130H204N36O40

Absent Amino Acids RCQIMF

Common Amino Acids A

Mass 2911.27

PI 7.71

Basic Residues 4

Acidic Residues 3

Hydrophobic Residues 14

Net Charge +0

Boman Index 5.49

Hydrophobicity -0.103

Aliphatic Index 81.03

Half Life

Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 6990

Absorbance 280nm 240.10

Polar Residues 4

number

7

A

0

R

1

N

1

D

0

C

2

E

0

Q

4

G

1

H

0

I

2

L

3

K

0

M

0

F

1

P

1

S

1

T

1

W

1

Y

3

V

Amino Acid Distribution

A: 7 R: 0 N: 1 D: 1 C: 0 E: 2 Q: 0 G: 4 H: 1 I: 0 L: 2 K: 3 M: 0 F: 0 P: 1 S: 1 T: 1 W: 1 Y: 1 V: 3

Length

29

Formula

C130H204N36O40

Mass

2911.27

PI

7.71

Net Charge

+0

Boman Index

5.49

Hydrophobicity

-0.103

Evidence 1 Activity

Source & Reference

Database Source NA