TPDB

3D PDB MODEL

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TPDB ID TPDB26114

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 45-aa standard natural antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

VFNWWEACIKLSGQCKNRCGEKEFKMSYCARPTTLCCMRHCDRIE

FASTA

>TPDB26114|Antibacterial|length=45
VFNWWEACIKLSGQCKNRCGEKEFKMSYCARPTTLCCMRHCDRIE

Formula C229H358N68O64S9

Absent Amino Acids

Common Amino Acids C

Mass 5376.32

PI 8.19

Basic Residues 9

Acidic Residues 5

Hydrophobic Residues 14

Net Charge +3

Boman Index 8.85

Hydrophobicity -0.489

Aliphatic Index 45.56

Half Life

Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 12865

Absorbance 280nm 239.29

Polar Residues 15

number

2

A

4

R

2

N

1

D

7

C

4

E

1

Q

2

G

1

H

2

I

2

L

4

K

2

M

2

F

1

P

2

S

2

T

2

W

1

Y

1

V

Amino Acid Distribution

A: 2 R: 4 N: 2 D: 1 C: 7 E: 4 Q: 1 G: 2 H: 1 I: 2 L: 2 K: 4 M: 2 F: 2 P: 1 S: 2 T: 2 W: 2 Y: 1 V: 1

Length

45

Formula

C229H358N68O64S9

Mass

5376.32

PI

8.19

Net Charge

+3

Boman Index

8.85

Hydrophobicity

-0.489

Evidence 1 Activity

Source & Reference

Database Source NA