TPDB

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.

TPDB ID TPDB26054

Activity

Antibacterial Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia AI4AVP dbAMP 3.0 DRAVP 2.0

Sequence_Type

standard

Has_Modification No

Description A 15-aa standard natural multi-activity (Antibacterial and Antiviral) peptide sequence curated from Peptipedia, AI4AVP, dbAMP 3.0, and other sources, with an available 3D structural model.

Sequence

VDCSPGIWQLDCTHL

FASTA

>TPDB26054|Antibacterial;Antiviral|length=15
VDCSPGIWQLDCTHL

Formula C73H111N19O23S2

Absent Amino Acids ARNEKMFY

Common Amino Acids DCL

Mass 1686.92

PI 3.88

Basic Residues 1

Acidic Residues 2

Hydrophobic Residues 5

Net Charge -2

Boman Index 1.04

Hydrophobicity 0.213

Aliphatic Index 97.33

Half Life

Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5625

Absorbance 280nm 333.45

Polar Residues 5

number

0

A

0

R

0

N

2

D

2

C

0

E

1

Q

1

G

1

H

1

I

2

L

0

K

0

M

0

F

1

P

1

S

1

T

1

W

0

Y

1

V

Amino Acid Distribution

A: 0 R: 0 N: 0 D: 2 C: 2 E: 0 Q: 1 G: 1 H: 1 I: 1 L: 2 K: 0 M: 0 F: 0 P: 1 S: 1 T: 1 W: 1 Y: 0 V: 1

Length

15

Formula

C73H111N19O23S2

Mass

1686.92

PI

3.88

Net Charge

-2

Boman Index

1.04

Hydrophobicity

0.213

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAVP 2.0