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Peptide record

TPDB25726

Antibacterial Antifungal standard
80 amino acids
Basic Information
3D PDB MODEL
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TPDB25726
Antibacterial Antifungal
Anti-infective peptides
Peptipedia CAFPdb dbAMP
standard
No
A 80-aa standard-residue multi-activity (Antibacterial and Antifungal) peptide sequence curated from Peptipedia, CAFPdb, and dbAMP, with an available 3D structural model.
Sequence
SPSRSCNTHCPDPYLNLPGHYVCCDQHPGKCFRRDKCPPHELNKGLRQTIKYCHYDPECALHEKCCYDVCIEAKVCKLPE
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C396H610N116O116S12
MW
C
9236.63
7.38
17
10
19
+1
2.19
-0.776
52.38
Mammalian: 1.9 hour Yeast: >20 hour E.coli: >10 hour
8200
0.89
27
Residue Composition
number
2
A
4
R
3
N
5
D
12
C
5
E
2
Q
3
G
6
H
2
I
6
L
7
K
0
M
1
F
9
P
3
S
2
T
0
W
5
Y
3
V
Amino Acid Distribution
A: 2 R: 4 N: 3 D: 5 C: 12 E: 5 Q: 2 G: 3 H: 6 I: 2 L: 6 K: 7 M: 0 F: 1 P: 9 S: 3 T: 2 W: 0 Y: 5 V: 3
Chemical Descriptors
80 reviewed residue count
C396H610N116O116S12 sequence-only estimate (linear, free termini)
9236.63 sequence-only estimate (linear, free termini)
7.38 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
2.19 sequence-only estimate (linear, free termini)
-0.776 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP CAFPdb