TPDB

3D PDB MODEL

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TPDB ID TPDB25291

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

modified_plain

Has_Modification Yes

Description A 52-aa modified antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.

Modification

Modified, details unspecified

Sequence

RSQPGPTCPSSVQAILCDNRCGRSACSYYIERCACCAKCNRIPYYGASNHPZ

FASTA

>TPDB25291|Antibacterial|length=52
RSQPGPTCPSSVQAILCDNRCGRSACSYYIERCACCAKCNRIPYYGASNHPZ

Formula C230H362N74O72S8

Absent Amino Acids MFW

Common Amino Acids C

Mass 5572.34

PI 8.31

Basic Residues 7

Acidic Residues 2

Hydrophobic Residues 14

Net Charge +4

Boman Index 6.92

Hydrophobicity -0.452

Aliphatic Index 45.19

Half Life

Mammalian: 1 hour Yeast: 2 min E.coli: 2 min

Extinction Coefficient Cystines 6460

Absorbance 280nm 115.93

Polar Residues 24

number

5

A

5

R

3

N

1

D

8

C

1

E

2

Q

3

G

1

H

3

I

1

L

1

K

0

M

0

F

5

P

6

S

1

T

0

W

4

Y

1

V

Amino Acid Distribution

A: 5 R: 5 N: 3 D: 1 C: 8 E: 1 Q: 2 G: 3 H: 1 I: 3 L: 1 K: 1 M: 0 F: 0 P: 5 S: 6 T: 1 W: 0 Y: 4 V: 1

Length

52

Formula

C230H362N74O72S8

Mass

5572.34

PI

8.31

Net Charge

+4

Boman Index

6.92

Hydrophobicity

-0.452

Evidence 1 Activity

Source & Reference

Database Source NA