TPDB

3D PDB MODEL

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TPDB ID TPDB24998

Activity

Antibacterial Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia AI4AVP dbAMP 3.0 DRAVP 2.0

Sequence_Type

standard

Has_Modification No

Description A 45-aa standard natural multi-activity (Antibacterial and Antiviral) peptide sequence curated from Peptipedia, AI4AVP, dbAMP 3.0, and other sources, with an available 3D structural model.

Sequence

RMKQIEDKIEEIESKIKKIENEIARIKKLLQLTVWGIKQLQARIL

FASTA

>TPDB24998|Antibacterial;Antiviral|length=45
RMKQIEDKIEEIESKIKKIENEIARIKKLLQLTVWGIKQLQARIL

Formula C244H426N68O67S1

Absent Amino Acids CHFPY

Common Amino Acids I

Mass 5416.54

PI 10.32

Basic Residues 11

Acidic Residues 7

Hydrophobic Residues 19

Net Charge +4

Boman Index 18.78

Hydrophobicity -0.451

Aliphatic Index 132.22

Half Life

Mammalian: 1 hour Yeast: 2 min E.coli: 2 min

Extinction Coefficient Cystines 5500

Absorbance 280nm 101.54

Polar Residues 7

number

2

A

3

R

1

N

1

D

0

C

6

E

4

Q

1

G

0

H

9

I

5

L

8

K

1

M

0

F

0

P

1

S

1

T

1

W

0

Y

1

V

Amino Acid Distribution

A: 2 R: 3 N: 1 D: 1 C: 0 E: 6 Q: 4 G: 1 H: 0 I: 9 L: 5 K: 8 M: 1 F: 0 P: 0 S: 1 T: 1 W: 1 Y: 0 V: 1

Length

45

Formula

C244H426N68O67S1

Mass

5416.54

PI

10.32

Net Charge

+4

Boman Index

18.78

Hydrophobicity

-0.451

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAVP 2.0