TPDB

3D PDB MODEL

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TPDB ID TPDB24996

Activity

Antibacterial Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia AI4AVP dbAMP 3.0 DRAVP 2.0

Sequence_Type

standard

Has_Modification No

Description A 29-aa standard natural multi-activity (Antibacterial and Antiviral) peptide sequence curated from Peptipedia, AI4AVP, dbAMP 3.0, and other sources, with an available 3D structural model.

Sequence

RMIYKNILFYLVPGPGHGAEPERRNIKYL

FASTA

>TPDB24996|Antibacterial;Antiviral|length=29
RMIYKNILFYLVPGPGHGAEPERRNIKYL

Formula C160H250N44O39S1

Absent Amino Acids DCQSTW

Common Amino Acids RGILPY

Mass 3446.08

PI 10.15

Basic Residues 6

Acidic Residues 2

Hydrophobic Residues 13

Net Charge +3

Boman Index 4.74

Hydrophobicity -0.441

Aliphatic Index 94.14

Half Life

Mammalian: 1 hour Yeast: 2 min E.coli: 2 min

Extinction Coefficient Cystines 4470

Absorbance 280nm 129.71

Polar Residues 5

number

1

A

3

R

2

N

0

D

0

C

2

E

0

Q

3

G

1

H

3

I

3

L

2

K

1

M

1

F

3

P

0

S

0

T

0

W

3

Y

1

V

Amino Acid Distribution

A: 1 R: 3 N: 2 D: 0 C: 0 E: 2 Q: 0 G: 3 H: 1 I: 3 L: 3 K: 2 M: 1 F: 1 P: 3 S: 0 T: 0 W: 0 Y: 3 V: 1

Length

29

Formula

C160H250N44O39S1

Mass

3446.08

PI

10.15

Net Charge

+3

Boman Index

4.74

Hydrophobicity

-0.441

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAVP 2.0