TPDB

3D PDB MODEL

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TPDB ID TPDB24180

Activity

Antibacterial Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia AI4AVP dbAMP 3.0 DRAVP 2.0

Sequence_Type

standard

Has_Modification No

Description A 35-aa standard natural multi-activity (Antibacterial and Antiviral) peptide sequence curated from Peptipedia, AI4AVP, dbAMP 3.0, and other sources, with an available 3D structural model.

Sequence

NQTKDLQQKFYEIIMDIEQNNVQGKKGIQQLQKWE

FASTA

>TPDB24180|Antibacterial;Antiviral|length=35
NQTKDLQQKFYEIIMDIEQNNVQGKKGIQQLQKWE

Formula C188H300N52O59S1

Absent Amino Acids ARCHPS

Common Amino Acids Q

Mass 4264.82

PI 7.09

Basic Residues 5

Acidic Residues 5

Hydrophobic Residues 11

Net Charge +0

Boman Index 13.09

Hydrophobicity -1.277

Aliphatic Index 75.14

Half Life

Mammalian: 1.4 hour Yeast: 3 min E.coli: >10 hour

Extinction Coefficient Cystines 6990

Absorbance 280nm 163.90

Polar Residues 13

number

0

A

0

R

3

N

2

D

0

C

3

E

8

Q

2

G

0

H

4

I

2

L

5

K

1

M

1

F

0

P

0

S

1

T

1

W

1

Y

1

V

Amino Acid Distribution

A: 0 R: 0 N: 3 D: 2 C: 0 E: 3 Q: 8 G: 2 H: 0 I: 4 L: 2 K: 5 M: 1 F: 1 P: 0 S: 0 T: 1 W: 1 Y: 1 V: 1

Length

35

Formula

C188H300N52O59S1

Mass

4264.82

PI

7.09

Net Charge

+0

Boman Index

13.09

Hydrophobicity

-1.277

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAVP 2.0