TPDB

3D PDB MODEL

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TPDB ID TPDB23589

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 68-aa standard natural antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MKNQLNFNIVSDEELAEVNGGSLQYVMSAGPYTWYKDTRTGKTICKQTIDTASYTFGVMAEGWGKTFH

FASTA

>TPDB23589|Antibacterial|length=68
MKNQLNFNIVSDEELAEVNGGSLQYVMSAGPYTWYKDTRTGKTICKQTIDTASYTFGVMAEGWGKTFH

Formula C339H513N87O106S4

Absent Amino Acids

Common Amino Acids T

Mass 7631.56

PI 5.54

Basic Residues 7

Acidic Residues 7

Hydrophobic Residues 26

Net Charge -1

Boman Index 9.28

Hydrophobicity -0.454

Aliphatic Index 57.35

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 16960

Absorbance 280nm 222.23

Polar Residues 24

number

4

A

1

R

4

N

3

D

1

C

4

E

3

Q

7

G

1

H

3

I

3

L

5

K

3

M

3

F

1

P

4

S

8

T

2

W

4

Y

4

V

Amino Acid Distribution

A: 4 R: 1 N: 4 D: 3 C: 1 E: 4 Q: 3 G: 7 H: 1 I: 3 L: 3 K: 5 M: 3 F: 3 P: 1 S: 4 T: 8 W: 2 Y: 4 V: 4

Length

68

Formula

C339H513N87O106S4

Mass

7631.56

PI

5.54

Net Charge

-1

Boman Index

9.28

Hydrophobicity

-0.454

Evidence 1 Activity

Source & Reference

Database Source NA