TPDB

3D PDB MODEL

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TPDB ID TPDB21052

Activity

Antibacterial Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia AI4AVP dbAMP 3.0 DRAVP 2.0

Sequence_Type

standard

Has_Modification No

Description A 17-aa standard natural multi-activity (Antibacterial and Antiviral) peptide sequence curated from Peptipedia, AI4AVP, dbAMP 3.0, and other sources, with an available 3D structural model.

Sequence

HGQVDCSPGIWQLDCTH

FASTA

>TPDB21052|Antibacterial;Antiviral|length=17
HGQVDCSPGIWQLDCTH

Formula C80H118N24O26S2

Absent Amino Acids ARNEKMFY

Common Amino Acids DCQGH

Mass 1896.08

PI 4.93

Basic Residues 2

Acidic Residues 2

Hydrophobic Residues 4

Net Charge -2

Boman Index 3.15

Hydrophobicity -0.453

Aliphatic Index 62.94

Half Life

Mammalian: 3.5 hour Yeast: 10 min E.coli: >10 hour

Extinction Coefficient Cystines 5625

Absorbance 280nm 296.66

Polar Residues 6

number

0

A

0

R

0

N

2

D

2

C

0

E

2

Q

2

G

2

H

1

I

1

L

0

K

0

M

0

F

1

P

1

S

1

T

1

W

0

Y

1

V

Amino Acid Distribution

A: 0 R: 0 N: 0 D: 2 C: 2 E: 0 Q: 2 G: 2 H: 2 I: 1 L: 1 K: 0 M: 0 F: 0 P: 1 S: 1 T: 1 W: 1 Y: 0 V: 1

Length

17

Formula

C80H118N24O26S2

Mass

1896.08

PI

4.93

Net Charge

-2

Boman Index

3.15

Hydrophobicity

-0.453

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAVP 2.0