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Peptide record

TPDB20611

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB20611
Antibacterial
Anti-infective peptides
Peptipedia
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.
Sequence
GRPNPVNNKPTPHPR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C72H117N27O20
ADCEQILMFSWY
P
1680.89
12.41
4
0
1
+3
3.84
-2.100
19.33
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
4
Residue Composition
number
0
A
2
R
3
N
0
D
0
C
0
E
0
Q
1
G
1
H
0
I
0
L
1
K
0
M
0
F
5
P
0
S
1
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 0 R: 2 N: 3 D: 0 C: 0 E: 0 Q: 0 G: 1 H: 1 I: 0 L: 0 K: 1 M: 0 F: 0 P: 5 S: 0 T: 1 W: 0 Y: 0 V: 1
Chemical Descriptors
15 reviewed residue count
C72H117N27O20 sequence-only estimate (linear, free termini)
1680.89 sequence-only estimate (linear, free termini)
12.41 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
3.84 sequence-only estimate (linear, free termini)
-2.100 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA