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Peptide record

TPDB20599

Antibacterial standard
12 amino acids
Basic Information
3D PDB MODEL
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TPDB20599
Antibacterial
Anti-infective peptides
Peptipedia
standard
No
A 12-aa standard-residue antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.
Sequence
GRKIAHGVKKYG
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C59H100N20O14
NDCEQLMFPSTW
GK
1313.57
10.91
5
0
4
+4
1.90
-0.950
65.00
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
1490
1.13
1
Residue Composition
number
1
A
1
R
0
N
0
D
0
C
0
E
0
Q
3
G
1
H
1
I
0
L
3
K
0
M
0
F
0
P
0
S
0
T
0
W
1
Y
1
V
Amino Acid Distribution
A: 1 R: 1 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 3 H: 1 I: 1 L: 0 K: 3 M: 0 F: 0 P: 0 S: 0 T: 0 W: 0 Y: 1 V: 1
Chemical Descriptors
12 reviewed residue count
C59H100N20O14 sequence-only estimate (linear, free termini)
1313.57 sequence-only estimate (linear, free termini)
10.91 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
1.90 sequence-only estimate (linear, free termini)
-0.950 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA