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Peptide record

TPDB20550

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
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TPDB20550
Antibacterial
Anti-infective peptides
Peptipedia
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.
Sequence
GNPKVKAHGKKVLGAFS
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C79H132N24O20
RDCEQIMTWY
K
1738.07
11.00
5
0
6
+4
0.85
-0.429
68.82
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
2
Residue Composition
number
2
A
0
R
1
N
0
D
0
C
0
E
0
Q
3
G
1
H
0
I
1
L
4
K
0
M
1
F
1
P
1
S
0
T
0
W
0
Y
2
V
Amino Acid Distribution
A: 2 R: 0 N: 1 D: 0 C: 0 E: 0 Q: 0 G: 3 H: 1 I: 0 L: 1 K: 4 M: 0 F: 1 P: 1 S: 1 T: 0 W: 0 Y: 0 V: 2
Chemical Descriptors
17 reviewed residue count
C79H132N24O20 sequence-only estimate (linear, free termini)
1738.07 sequence-only estimate (linear, free termini)
11.00 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
0.85 sequence-only estimate (linear, free termini)
-0.429 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA