Back to search

Peptide record

TPDB20533

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB20533
Antibacterial
Anti-infective peptides
Peptipedia
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.
Sequence
GNNRPIYIPRPRPPHPRL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C97H156N34O22
ADCEQKMFSTWV
P
2150.52
12.40
5
0
4
+4
3.45
-1.483
65.00
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
1490
0.69
3
Residue Composition
number
0
A
4
R
2
N
0
D
0
C
0
E
0
Q
1
G
1
H
2
I
1
L
0
K
0
M
0
F
6
P
0
S
0
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 0 R: 4 N: 2 D: 0 C: 0 E: 0 Q: 0 G: 1 H: 1 I: 2 L: 1 K: 0 M: 0 F: 0 P: 6 S: 0 T: 0 W: 0 Y: 1 V: 0
Chemical Descriptors
18 reviewed residue count
C97H156N34O22 sequence-only estimate (linear, free termini)
2150.52 sequence-only estimate (linear, free termini)
12.40 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
3.45 sequence-only estimate (linear, free termini)
-1.483 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA