Back to search

Peptide record

TPDB20249

Antibacterial Antifungal standard
18 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB20249
Antibacterial Antifungal
Anti-infective peptides
Peptipedia CAFPdb dbAMP
standard
No
A 18-aa standard-residue multi-activity (Antibacterial and Antifungal) peptide sequence curated from Peptipedia, CAFPdb, and dbAMP, with an available 3D structural model.
Sequence
GLCKYRCSLHSRPNVCFR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C91H147N31O23S3
ADEQIMTW
RC
2139.54
9.81
5
0
5
+4
2.61
-0.383
59.44
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
1615
0.75
7
Residue Composition
number
0
A
3
R
1
N
0
D
3
C
0
E
0
Q
1
G
1
H
0
I
2
L
1
K
0
M
1
F
1
P
2
S
0
T
0
W
1
Y
1
V
Amino Acid Distribution
A: 0 R: 3 N: 1 D: 0 C: 3 E: 0 Q: 0 G: 1 H: 1 I: 0 L: 2 K: 1 M: 0 F: 1 P: 1 S: 2 T: 0 W: 0 Y: 1 V: 1
Chemical Descriptors
18 reviewed residue count
C91H147N31O23S3 sequence-only estimate (linear, free termini)
2139.54 sequence-only estimate (linear, free termini)
9.81 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
2.61 sequence-only estimate (linear, free termini)
-0.383 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP CAFPdb