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Peptide record

TPDB20209

Antibacterial standard
11 amino acids
Basic Information
3D PDB MODEL
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TPDB20209
Antibacterial
Anti-infective peptides
Peptipedia
standard
No
A 11-aa standard-residue antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.
Sequence
GKEKVNELSKD
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C52H91N15O20
ARCQHIMFPTWY
K
1246.38
7.08
3
3
2
+0
3.56
-1.718
61.82
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
2
Residue Composition
number
0
A
0
R
1
N
1
D
0
C
2
E
0
Q
1
G
0
H
0
I
1
L
3
K
0
M
0
F
0
P
1
S
0
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 0 R: 0 N: 1 D: 1 C: 0 E: 2 Q: 0 G: 1 H: 0 I: 0 L: 1 K: 3 M: 0 F: 0 P: 0 S: 1 T: 0 W: 0 Y: 0 V: 1
Chemical Descriptors
11 reviewed residue count
C52H91N15O20 sequence-only estimate (linear, free termini)
1246.38 sequence-only estimate (linear, free termini)
7.08 sequence-only estimate (linear, free termini)
+0 sequence-only estimate (linear, free termini)
3.56 sequence-only estimate (linear, free termini)
-1.718 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA