Back to search

Peptide record

TPDB20106

Antibacterial Antifungal standard
28 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB20106
Antibacterial Antifungal
Anti-infective peptides
Peptipedia CAFPdb dbAMP
standard
No
A 28-aa standard-residue multi-activity (Antibacterial and Antifungal) peptide sequence curated from Peptipedia, CAFPdb, and dbAMP, with an available 3D structural model.
Sequence
GILDSFKDVAKGVATHLLNMAKCKMTGC
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C127H215N35O37S4
REQPWY
K
2952.56
9.05
5
2
12
+2
0.47
0.307
87.14
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
125
0.04
6
Residue Composition
number
3
A
0
R
1
N
2
D
2
C
0
E
0
Q
3
G
1
H
1
I
3
L
4
K
2
M
1
F
0
P
1
S
2
T
0
W
0
Y
2
V
Amino Acid Distribution
A: 3 R: 0 N: 1 D: 2 C: 2 E: 0 Q: 0 G: 3 H: 1 I: 1 L: 3 K: 4 M: 2 F: 1 P: 0 S: 1 T: 2 W: 0 Y: 0 V: 2
Chemical Descriptors
28 reviewed residue count
C127H215N35O37S4 sequence-only estimate (linear, free termini)
2952.56 sequence-only estimate (linear, free termini)
9.05 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
0.47 sequence-only estimate (linear, free termini)
0.307 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP CAFPdb