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Peptide record

TPDB20063

Antibacterial Antifungal standard
42 amino acids
Basic Information
3D PDB MODEL
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TPDB20063
Antibacterial Antifungal
Anti-infective peptides
Peptipedia CAFPdb
standard
No
A 42-aa standard-residue multi-activity (Antibacterial and Antifungal) peptide sequence curated from Peptipedia and CAFPdb, with an available 3D structural model.
Sequence
GIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGRKCCR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C198H341N67O56S6
DHMFW
RC
4748.66
9.87
10
2
11
+8
2.46
-0.457
71.90
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
3355
0.71
15
Residue Composition
number
1
A
6
R
1
N
0
D
6
C
2
E
2
Q
5
G
0
H
3
I
3
L
4
K
0
M
0
F
1
P
2
S
2
T
0
W
2
Y
2
V
Amino Acid Distribution
A: 1 R: 6 N: 1 D: 0 C: 6 E: 2 Q: 2 G: 5 H: 0 I: 3 L: 3 K: 4 M: 0 F: 0 P: 1 S: 2 T: 2 W: 0 Y: 2 V: 2
Chemical Descriptors
42 reviewed residue count
C198H341N67O56S6 sequence-only estimate (linear, free termini)
4748.66 sequence-only estimate (linear, free termini)
9.87 sequence-only estimate (linear, free termini)
+8 sequence-only estimate (linear, free termini)
2.46 sequence-only estimate (linear, free termini)
-0.457 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

CAFPdb