TPDB

3D PDB MODEL

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TPDB ID TPDB18823

Activity

Antibacterial Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia dbAMP 3.0 DRAVP 2.0

Sequence_Type

standard

Has_Modification No

Description A 60-aa standard natural multi-activity (Antibacterial and Antiviral) peptide sequence curated from Peptipedia, dbAMP 3.0, and DRAVP 2.0, with an available 3D structural model.

Sequence

ELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQEL

FASTA

>TPDB18823|Antibacterial;Antiviral|length=60
ELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQEL

Formula C298H478N78O104

Absent Amino Acids CMW

Common Amino Acids L

Mass 6817.53

PI 4.06

Basic Residues 7

Acidic Residues 14

Hydrophobic Residues 22

Net Charge -8

Boman Index 25.12

Hydrophobicity -0.562

Aliphatic Index 107.17

Half Life

Mammalian: 1 hour Yeast: 30 min E.coli: >10 hour

Extinction Coefficient Cystines 1490

Absorbance 280nm 21.86

Polar Residues 15

number

2

A

1

R

6

N

7

D

0

C

7

E

2

Q

2

G

1

H

5

I

8

L

5

K

0

M

2

F

1

P

5

S

1

T

0

W

1

Y

4

V

Amino Acid Distribution

A: 2 R: 1 N: 6 D: 7 C: 0 E: 7 Q: 2 G: 2 H: 1 I: 5 L: 8 K: 5 M: 0 F: 2 P: 1 S: 5 T: 1 W: 0 Y: 1 V: 4

Length

60

Formula

C298H478N78O104

Mass

6817.53

PI

4.06

Net Charge

-8

Boman Index

25.12

Hydrophobicity

-0.562

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAVP 2.0