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Peptide record

TPDB18810

Antibacterial standard
12 amino acids
Basic Information
3D PDB MODEL
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TPDB18810
Antibacterial
Anti-infective peptides
Peptipedia
standard
No
A 12-aa standard-residue antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.
Sequence
EKFGKDKSPKFQ
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C66H103N17O19
ARNCHILMTWYV
K
1438.65
10.16
4
2
2
+2
3.31
-1.942
0.00
Mammalian: 1 hour Yeast: 30 min E.coli: >10 hour
0
0.00
2
Residue Composition
number
0
A
0
R
0
N
1
D
0
C
1
E
1
Q
1
G
0
H
0
I
0
L
4
K
0
M
2
F
1
P
1
S
0
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 0 N: 0 D: 1 C: 0 E: 1 Q: 1 G: 1 H: 0 I: 0 L: 0 K: 4 M: 0 F: 2 P: 1 S: 1 T: 0 W: 0 Y: 0 V: 0
Chemical Descriptors
12 reviewed residue count
C66H103N17O19 sequence-only estimate (linear, free termini)
1438.65 sequence-only estimate (linear, free termini)
10.16 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
3.31 sequence-only estimate (linear, free termini)
-1.942 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA