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Peptide record

TPDB18638

Antibacterial Antifungal standard
13 amino acids
Basic Information
3D PDB MODEL
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TPDB18638
Antibacterial Antifungal
Anti-infective peptides
Peptipedia CAFPdb
standard
No
A 13-aa standard-residue multi-activity (Antibacterial and Antifungal) peptide sequence curated from Peptipedia and CAFPdb, with an available 3D structural model.
Sequence
DSHAKRHHGYKRK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C69H110N28O18
NCEQILMFPTWV
HK
1619.81
10.89
8
1
2
+4
5.38
-2.654
7.69
Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour
1490
0.92
2
Residue Composition
number
1
A
2
R
0
N
1
D
0
C
0
E
0
Q
1
G
3
H
0
I
0
L
3
K
0
M
0
F
0
P
1
S
0
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 1 R: 2 N: 0 D: 1 C: 0 E: 0 Q: 0 G: 1 H: 3 I: 0 L: 0 K: 3 M: 0 F: 0 P: 0 S: 1 T: 0 W: 0 Y: 1 V: 0
Chemical Descriptors
13 reviewed residue count
C69H110N28O18 sequence-only estimate (linear, free termini)
1619.81 sequence-only estimate (linear, free termini)
10.89 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
5.38 sequence-only estimate (linear, free termini)
-2.654 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

CAFPdb