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Peptide record

TPDB18544

Antibacterial standard
10 amino acids
Basic Information
3D PDB MODEL
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TPDB18544
Antibacterial
Anti-infective peptides
Peptipedia
standard
No
A 10-aa standard-residue antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.
Sequence
DFGFDIPDEV
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C53H72N10O19
ARNCQHLKMSTWY
D
1153.21
2.78
0
4
4
-4
1.71
-0.170
68.00
Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour
0
0.00
0
Residue Composition
number
0
A
0
R
0
N
3
D
0
C
1
E
0
Q
1
G
0
H
1
I
0
L
0
K
0
M
2
F
1
P
0
S
0
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 0 R: 0 N: 0 D: 3 C: 0 E: 1 Q: 0 G: 1 H: 0 I: 1 L: 0 K: 0 M: 0 F: 2 P: 1 S: 0 T: 0 W: 0 Y: 0 V: 1
Chemical Descriptors
10 reviewed residue count
C53H72N10O19 sequence-only estimate (linear, free termini)
1153.21 sequence-only estimate (linear, free termini)
2.78 sequence-only estimate (linear, free termini)
-4 sequence-only estimate (linear, free termini)
1.71 sequence-only estimate (linear, free termini)
-0.170 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Activity

Antibacterial

Source & Reference

NA

Other

active against Gram+ B. cereus.