TPDB

3D PDB MODEL

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TPDB ID TPDB18539

Activity

Antibacterial Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia dbAMP 3.0 DRAMP DRAVP 2.0

Sequence_Type

standard

Has_Modification No

Description A 85-aa standard natural multi-activity (Antibacterial and Antiviral) peptide sequence curated from Peptipedia, dbAMP 3.0, DRAMP, and other sources, with an available 3D structural model.

Sequence

DEDLEELERLYRKAEEVAKEAKDASRRGDDERAKEQMERAMRLFDQVFELAQELQEKQTDGNRQKATHLDKAVKEAADELYQRVR

FASTA

>TPDB18539|Antibacterial;Antiviral|length=85
DEDLEELERLYRKAEEVAKEAKDASRRGDDERAKEQMERAMRLFDQVFELAQELQEKQTDGNRQKATHLDKAVKEAADELYQRVR

Formula C426H695N133O147S2

Absent Amino Acids CIPW

Common Amino Acids E

Mass 10096.13

PI 4.70

Basic Residues 19

Acidic Residues 24

Hydrophobic Residues 29

Net Charge -6

Boman Index 52.59

Hydrophobicity -1.419

Aliphatic Index 63.29

Half Life

Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour

Extinction Coefficient Cystines 2980

Absorbance 280nm 29.52

Polar Residues 13

number

11

A

10

R

1

N

9

D

0

C

15

E

7

Q

2

G

1

H

0

I

8

L

8

K

2

M

2

F

0

P

1

S

2

T

0

W

2

Y

4

V

Amino Acid Distribution

A: 11 R: 10 N: 1 D: 9 C: 0 E: 15 Q: 7 G: 2 H: 1 I: 0 L: 8 K: 8 M: 2 F: 2 P: 0 S: 1 T: 2 W: 0 Y: 2 V: 4

Length

85

Formula

C426H695N133O147S2

Mass

10096.13

PI

4.70

Net Charge

-6

Boman Index

52.59

Hydrophobicity

-1.419

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAMP DRAVP 2.0