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Peptide record

TPDB18538

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
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TPDB18538
Antibacterial
Anti-infective peptides
Peptipedia
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.
Sequence
DEPDAERFEAAVEADHI
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C81H120N22O32
NCQGLKMSTWY
AE
1913.97
3.68
2
7
7
-6
3.16
-0.888
63.53
Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour
0
0.00
0
Residue Composition
number
4
A
1
R
0
N
3
D
0
C
4
E
0
Q
0
G
1
H
1
I
0
L
0
K
0
M
1
F
1
P
0
S
0
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 4 R: 1 N: 0 D: 3 C: 0 E: 4 Q: 0 G: 0 H: 1 I: 1 L: 0 K: 0 M: 0 F: 1 P: 1 S: 0 T: 0 W: 0 Y: 0 V: 1
Chemical Descriptors
17 reviewed residue count
C81H120N22O32 sequence-only estimate (linear, free termini)
1913.97 sequence-only estimate (linear, free termini)
3.68 sequence-only estimate (linear, free termini)
-6 sequence-only estimate (linear, free termini)
3.16 sequence-only estimate (linear, free termini)
-0.888 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA