TPDB

3D PDB MODEL

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TPDB ID TPDB18273

Activity

Antibacterial Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia AI4AVP dbAMP 3.0 DRAVP 2.0

Sequence_Type

standard

Has_Modification No

Description A 29-aa standard natural multi-activity (Antibacterial and Antiviral) peptide sequence curated from Peptipedia, AI4AVP, dbAMP 3.0, and other sources, with an available 3D structural model.

Sequence

AWDFGSVGGVFNSLGKGIHQIFGAAFKSL

FASTA

>TPDB18273|Antibacterial;Antiviral|length=29
AWDFGSVGGVFNSLGKGIHQIFGAAFKSL

Formula C142H208N36O37

Absent Amino Acids RCEMPTY

Common Amino Acids G

Mass 3011.43

PI 9.88

Basic Residues 3

Acidic Residues 1

Hydrophobic Residues 14

Net Charge +1

Boman Index -2.86

Hydrophobicity 0.497

Aliphatic Index 84.14

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5500

Absorbance 280nm 182.64

Polar Residues 5

number

3

A

0

R

1

N

1

D

0

C

0

E

1

Q

6

G

1

H

2

I

2

L

2

K

0

M

4

F

0

P

3

S

0

T

1

W

0

Y

2

V

Amino Acid Distribution

A: 3 R: 0 N: 1 D: 1 C: 0 E: 0 Q: 1 G: 6 H: 1 I: 2 L: 2 K: 2 M: 0 F: 4 P: 0 S: 3 T: 0 W: 1 Y: 0 V: 2

Length

29

Formula

C142H208N36O37

Mass

3011.43

PI

9.88

Net Charge

+1

Boman Index

-2.86

Hydrophobicity

0.497

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAVP 2.0