TPDB

3D PDB MODEL

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TPDB ID TPDB18272

Activity

Antibacterial Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia AI4AVP AVPpred-BWR dbAMP 3.0 DRAVP 2.0

Sequence_Type

standard

Has_Modification No

Description A 29-aa standard natural multi-activity (Antibacterial and Antiviral) peptide sequence curated from Peptipedia, AI4AVP, AVPpred-BWR, and other sources, with an available 3D structural model.

Sequence

AWDFGSVGGLFTSLGKAVHQVFGSVYTTM

FASTA

>TPDB18272|Antibacterial;Antiviral|length=29
AWDFGSVGGLFTSLGKAVHQVFGSVYTTM

Formula C142H208N34O40S1

Absent Amino Acids RNCEIP

Common Amino Acids G

Mass 3063.48

PI 7.75

Basic Residues 2

Acidic Residues 1

Hydrophobic Residues 14

Net Charge +0

Boman Index -2.97

Hydrophobicity 0.534

Aliphatic Index 73.79

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 6990

Absorbance 280nm 228.17

Polar Residues 8

number

2

A

0

R

0

N

1

D

0

C

0

E

1

Q

5

G

1

H

0

I

2

L

1

K

1

M

3

F

0

P

3

S

3

T

1

W

1

Y

4

V

Amino Acid Distribution

A: 2 R: 0 N: 0 D: 1 C: 0 E: 0 Q: 1 G: 5 H: 1 I: 0 L: 2 K: 1 M: 1 F: 3 P: 0 S: 3 T: 3 W: 1 Y: 1 V: 4

Length

29

Formula

C142H208N34O40S1

Mass

3063.48

PI

7.75

Net Charge

+0

Boman Index

-2.97

Hydrophobicity

0.534

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAVP 2.0