TPDB

3D PDB MODEL

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TPDB ID TPDB18271

Activity

Antibacterial Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia AI4AVP AVPpred-BWR dbAMP 3.0 DRAVP 2.0

Sequence_Type

standard

Has_Modification No

Description A 29-aa standard natural multi-activity (Antibacterial and Antiviral) peptide sequence curated from Peptipedia, AI4AVP, AVPpred-BWR, and other sources, with an available 3D structural model.

Sequence

AWDFGSLGGVFTSIGKALHQVFGGAFGAA

FASTA

>TPDB18271|Antibacterial;Antiviral|length=29
AWDFGSLGGVFTSIGKALHQVFGGAFGAA

Formula C135H194N34O36

Absent Amino Acids RNCEMPY

Common Amino Acids G

Mass 2869.23

PI 7.81

Basic Residues 2

Acidic Residues 1

Hydrophobic Residues 15

Net Charge +0

Boman Index -4.28

Hydrophobicity 0.710

Aliphatic Index 77.59

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5500

Absorbance 280nm 191.69

Polar Residues 4

number

5

A

0

R

0

N

1

D

0

C

0

E

1

Q

7

G

1

H

1

I

2

L

1

K

0

M

4

F

0

P

2

S

1

T

1

W

0

Y

2

V

Amino Acid Distribution

A: 5 R: 0 N: 0 D: 1 C: 0 E: 0 Q: 1 G: 7 H: 1 I: 1 L: 2 K: 1 M: 0 F: 4 P: 0 S: 2 T: 1 W: 1 Y: 0 V: 2

Length

29

Formula

C135H194N34O36

Mass

2869.23

PI

7.81

Net Charge

+0

Boman Index

-4.28

Hydrophobicity

0.710

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAVP 2.0