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Peptide record

TPDB18266

Antibacterial standard
9 amino acids
Basic Information
3D PDB MODEL
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TPDB18266
Antibacterial
Anti-infective peptides
Peptipedia
standard
No
A 9-aa standard-residue antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.
Sequence
AYQGVQQKW
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C51H74N14O14
RNDCEHILMFPST
Q
1107.23
9.74
1
0
4
+1
1.47
-1.222
43.33
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
6990
6.31
4
Residue Composition
number
1
A
0
R
0
N
0
D
0
C
0
E
3
Q
1
G
0
H
0
I
0
L
1
K
0
M
0
F
0
P
0
S
0
T
1
W
1
Y
1
V
Amino Acid Distribution
A: 1 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 3 G: 1 H: 0 I: 0 L: 0 K: 1 M: 0 F: 0 P: 0 S: 0 T: 0 W: 1 Y: 1 V: 1
Chemical Descriptors
9 reviewed residue count
C51H74N14O14 sequence-only estimate (linear, free termini)
1107.23 sequence-only estimate (linear, free termini)
9.74 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
1.47 sequence-only estimate (linear, free termini)
-1.222 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA