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Peptide record

TPDB18182

Antibacterial standard
16 amino acids
Basic Information
3D PDB MODEL
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TPDB18182
Antibacterial
Anti-infective peptides
Peptipedia
standard
No
A 16-aa standard-residue antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.
Sequence
ATAAECLKHPWLKIKK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C85H141N23O20S1
RNDQGMFSYV
K
1837.26
10.17
5
1
7
+3
0.78
-0.344
91.88
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
5500
2.99
2
Residue Composition
number
3
A
0
R
0
N
0
D
1
C
1
E
0
Q
0
G
1
H
1
I
2
L
4
K
0
M
0
F
1
P
0
S
1
T
1
W
0
Y
0
V
Amino Acid Distribution
A: 3 R: 0 N: 0 D: 0 C: 1 E: 1 Q: 0 G: 0 H: 1 I: 1 L: 2 K: 4 M: 0 F: 0 P: 1 S: 0 T: 1 W: 1 Y: 0 V: 0
Chemical Descriptors
16 reviewed residue count
C85H141N23O20S1 sequence-only estimate (linear, free termini)
1837.26 sequence-only estimate (linear, free termini)
10.17 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
0.78 sequence-only estimate (linear, free termini)
-0.344 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA