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Peptide record

TPDB18090

Antibacterial standard
9 amino acids
Basic Information
3D PDB MODEL
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TPDB18090
Antibacterial
Anti-infective peptides
Peptipedia
standard
No
A 9-aa standard-residue antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.
Sequence
AMLGHAGDM
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C36H59N11O12S2
RNCEQIKFPSTWYV
AGM
902.05
4.94
1
1
5
-1
-0.19
0.411
65.56
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
0
Residue Composition
number
2
A
0
R
0
N
1
D
0
C
0
E
0
Q
2
G
1
H
0
I
1
L
0
K
2
M
0
F
0
P
0
S
0
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 2 R: 0 N: 0 D: 1 C: 0 E: 0 Q: 0 G: 2 H: 1 I: 0 L: 1 K: 0 M: 2 F: 0 P: 0 S: 0 T: 0 W: 0 Y: 0 V: 0
Chemical Descriptors
9 reviewed residue count
C36H59N11O12S2 sequence-only estimate (linear, free termini)
902.05 sequence-only estimate (linear, free termini)
4.94 sequence-only estimate (linear, free termini)
-1 sequence-only estimate (linear, free termini)
-0.19 sequence-only estimate (linear, free termini)
0.411 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA