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Peptide record

TPDB18087

Antibacterial standard
9 amino acids
Basic Information
3D PDB MODEL
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TPDB18087
Antibacterial
Anti-infective peptides
Peptipedia
standard
No
A 9-aa standard-residue antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.
Sequence
AMEDLVRAY
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C46H74N12O15S1
NCQGHIKFPSTW
A
1067.23
4.07
1
2
6
-1
1.74
0.078
97.78
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
1490
1.40
1
Residue Composition
number
2
A
1
R
0
N
1
D
0
C
1
E
0
Q
0
G
0
H
0
I
1
L
0
K
1
M
0
F
0
P
0
S
0
T
0
W
1
Y
1
V
Amino Acid Distribution
A: 2 R: 1 N: 0 D: 1 C: 0 E: 1 Q: 0 G: 0 H: 0 I: 0 L: 1 K: 0 M: 1 F: 0 P: 0 S: 0 T: 0 W: 0 Y: 1 V: 1
Chemical Descriptors
9 reviewed residue count
C46H74N12O15S1 sequence-only estimate (linear, free termini)
1067.23 sequence-only estimate (linear, free termini)
4.07 sequence-only estimate (linear, free termini)
-1 sequence-only estimate (linear, free termini)
1.74 sequence-only estimate (linear, free termini)
0.078 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA