Back to search

Peptide record

TPDB17904

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB17904
Antibacterial
Anti-infective peptides
Peptipedia
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.
Sequence
AGLFKKLARAIKKGFKA
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C88H151N25O18
NDCEQHMPSTWYV
K
1847.32
11.85
6
0
9
+6
0.75
0.006
92.35
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
0
Residue Composition
number
4
A
1
R
0
N
0
D
0
C
0
E
0
Q
2
G
0
H
1
I
2
L
5
K
0
M
2
F
0
P
0
S
0
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 4 R: 1 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 2 H: 0 I: 1 L: 2 K: 5 M: 0 F: 2 P: 0 S: 0 T: 0 W: 0 Y: 0 V: 0
Chemical Descriptors
17 reviewed residue count
C88H151N25O18 sequence-only estimate (linear, free termini)
1847.32 sequence-only estimate (linear, free termini)
11.85 sequence-only estimate (linear, free termini)
+6 sequence-only estimate (linear, free termini)
0.75 sequence-only estimate (linear, free termini)
0.006 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA