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Peptide record

TPDB17796

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB17796
Antibacterial
Anti-infective peptides
Peptipedia
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from Peptipedia, with an available 3D structural model.
Sequence
AAGAGKVTKSAQKAQKAK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C74H135N25O23
RNDCEHILMFPWY
A
1743.04
11.12
5
0
7
+5
1.56
-0.767
49.44
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
4
Residue Composition
number
6
A
0
R
0
N
0
D
0
C
0
E
2
Q
2
G
0
H
0
I
0
L
5
K
0
M
0
F
0
P
1
S
1
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 6 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 2 G: 2 H: 0 I: 0 L: 0 K: 5 M: 0 F: 0 P: 0 S: 1 T: 1 W: 0 Y: 0 V: 1
Chemical Descriptors
18 reviewed residue count
C74H135N25O23 sequence-only estimate (linear, free termini)
1743.04 sequence-only estimate (linear, free termini)
11.12 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
1.56 sequence-only estimate (linear, free termini)
-0.767 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA