Back to search

Peptide record

TPDB17633

Antibacterial standard
12 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB17633
Antibacterial
Anti-infective peptides
pep-lab Peptipedia
standard
No
A 12-aa standard-residue antibacterial peptide sequence curated from pep-lab and Peptipedia, with an available 3D structural model.
Sequence
YCNGKRVCVCRG
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C54H92N20O15S3
ADEQHILMFPSTW
C
1357.63
9.16
3
0
3
+3
2.36
-0.217
48.33
Mammalian: 2.8 hour Yeast: 10 min E.coli: 2 min
1615
1.19
5
Residue Composition
number
0
A
2
R
1
N
0
D
3
C
0
E
0
Q
2
G
0
H
0
I
0
L
1
K
0
M
0
F
0
P
0
S
0
T
0
W
1
Y
2
V
Amino Acid Distribution
A: 0 R: 2 N: 1 D: 0 C: 3 E: 0 Q: 0 G: 2 H: 0 I: 0 L: 0 K: 1 M: 0 F: 0 P: 0 S: 0 T: 0 W: 0 Y: 1 V: 2
Chemical Descriptors
12 reviewed residue count
C54H92N20O15S3 sequence-only estimate (linear, free termini)
1357.63 sequence-only estimate (linear, free termini)
9.16 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
2.36 sequence-only estimate (linear, free termini)
-0.217 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA