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Peptide record

TPDB17627

Antibacterial standard
11 amino acids
Basic Information
3D PDB MODEL
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TPDB17627
Antibacterial
Anti-infective peptides
pep-lab Peptipedia
standard
No
A 11-aa standard-residue antibacterial peptide sequence curated from pep-lab and Peptipedia, with an available 3D structural model.
Sequence
APRKNVRWCTI
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C59H98N20O14S1
DEQGHLMFSY
R
1343.61
11.32
3
0
4
+3
2.75
-0.600
70.91
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
5500
4.09
3
Residue Composition
number
1
A
2
R
1
N
0
D
1
C
0
E
0
Q
0
G
0
H
1
I
0
L
1
K
0
M
0
F
1
P
0
S
1
T
1
W
0
Y
1
V
Amino Acid Distribution
A: 1 R: 2 N: 1 D: 0 C: 1 E: 0 Q: 0 G: 0 H: 0 I: 1 L: 0 K: 1 M: 0 F: 0 P: 1 S: 0 T: 1 W: 1 Y: 0 V: 1
Chemical Descriptors
11 reviewed residue count
C59H98N20O14S1 sequence-only estimate (linear, free termini)
1343.61 sequence-only estimate (linear, free termini)
11.32 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
2.75 sequence-only estimate (linear, free termini)
-0.600 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA