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Peptide record

TPDB17531

Antibacterial standard
10 amino acids
Basic Information
3D PDB MODEL
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TPDB17531
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 10-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
IDDVDSIIKN
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C48H82N12O19
ARCEQGHLMFPTWY
DI
1131.25
3.59
1
3
4
-2
2.30
-0.100
146.00
Mammalian: 20 hour Yeast: 30 min E.coli: >10 hour
0
0.00
2
Residue Composition
number
0
A
0
R
1
N
3
D
0
C
0
E
0
Q
0
G
0
H
3
I
0
L
1
K
0
M
0
F
0
P
1
S
0
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 0 R: 0 N: 1 D: 3 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 3 L: 0 K: 1 M: 0 F: 0 P: 0 S: 1 T: 0 W: 0 Y: 0 V: 1
Chemical Descriptors
10 reviewed residue count
C48H82N12O19 sequence-only estimate (linear, free termini)
1131.25 sequence-only estimate (linear, free termini)
3.59 sequence-only estimate (linear, free termini)
-2 sequence-only estimate (linear, free termini)
2.30 sequence-only estimate (linear, free termini)
-0.100 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.